SE1630009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2690
  • Manihot esculenta
  • SE1630009
  • hAT
  • Hat2
  • scaffold12794:1643828-1643999
  • AGTGTACT
  • AGTGTACTCAGGGGCGGAGGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                       GA    CCATTT  T   - CACCGCTGCGCACTGCTGCGGCACCACCGGCTGCGCCGCTGCGGCACC
AGTGTACTCAGGGGCGGAGGGAG  GCTT      GG AGG G                                                
|||||||||||||||||||||||  ||||      || ||| |                                                 
TCATGTGAGTCCCCGCCTCCCTC  CCAT      GC CGT C                                                
                       --    ------  -   T CCCGTGCACGGCATGGCCGCTGACCTTTTACGAAATTTCCCCCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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