SE1620011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2692
  • Manihot esculenta
  • SE1620011
  • Mutator
  • M1
  • scaffold06974:51186-51590
  • TTTTATTTA
  • AGAGAAAATTATTACTTAGTCCCTATGATACAGGCAAACTTATGAGCTAGTCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTATTT  A                 C C    A  C   C        G  C    -  ATCA   CG       AC        A       C                        C   C    AA   T            --------TTT       -   CCCTGT   TTTGAAAAACTTATTAGATGGTCTCTCAAATT
        AG GAAAATTATTACTTAGT C TATG TA AGG AAACTTAT AG TAGT CT    GTT  GAAAAAT  ATTAAAAT TCCCTGA GTTTTAAAAAGTCTATTAGTTAGT CCT CGTT  TTT GCTGTTAAGTAT           ACTATTT AAT      AGT                                
        || ||||||||||||||||| | |||| || ||| |||||||| || |||| ||    |||  |||||||  |||||||| ||||||| |||||||||||||||||||||||| ||| ||||  ||| ||||||||||||           ||||||| |||      |||                                 
        TC CTTTTAATGATGAATCA G ATAT AT TCT TTTGAGTG TC ATCA GA    TAA  CTTTTTA  TAATTTTG AGGGATT CAAAATTTTTCAGATGATCAATCA GGA GTAA  AAA TGGTAATTCATA           GATTTTA GGG      AAC                                
ATTTATTT  C                 A A    C  A   C        A  A    A  -ACC   AA       CA        C       A                        A   A    CA   T            TCGTTTTTTCA       C   ------   TATGTTTCCTTGATTAATCATTTAAAAAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End