SE1630012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2693
  • Manihot esculenta
  • SE1630012
  • hAT
  • Hat3
  • scaffold12147:102064-102805
  • GAAGCATT
  • GCATTTAGGGGTGTAAACGAACCGAGCC

Secondary structure and sequence

TSD    TIR
5'



3'
GAA  A              C          ---        --   T AAGAGTTCAAGCTTGGTTCGTTAAAATTTTTTCGAGCTCAAGCCGAATTCGAGCTTTACTCATATCGAACTCGAGCCGAGTATTAAGAAGCTCAAGCTTGGCTCGTTTAGCAAACGAGCTTAGATGAGTCGAGCTTTTATCGAGCTGAGTCGAGCTTTTATCGAGCTGAGTCTCAAATAGTTCACGAGTAATTTAATTTATTTACTTGTATAATGAGTTTTAGTTTAAAACTAATAAGTTTAAAACTAAAATAATTTTAGTTAAATAAGTATATCTACAAATTAGCATGTAAACTTATAAATATGAGTTTTTAAATCTTAATGAT
   GC TTTAGGGGTGTAAA GAACCGAGCC   GAGCCGAG  CTT G                                                                                                                                                                                                                                                                                                                                     
   || |||||||||||||| ||||||||||   ||||||||  ||| |                                                                                                                                                                                                                                                                                                                                      
   CG AGATCCCCACATTT CTTGGTTTGG   GCACTCGA  AGC T                                                                                                                                                                                                                                                                                                                                     
TTA  A              A          CAA        TA   - CCAAATTAAGCTATTTTCGAGCTGCCTCGAGCTGAGCTAAAGATTTGCTCGGTTCGAGCTCGAATTAAAAATCCGAGCAAACCATTTGTTCAGTTTGAACTCGAGGTATCATAAGCTGAGCAATTCCCAGCACTCGAGCCGAGCAAAGACTCAAGTACTCGTCCGAGCGCTTATCTGAGCACTTGTCAGAGCAATTCGTTTGACTTTAATAATAGTATTCTCTTTATTTGAGTTTGGGACGTATATGAAATTACTCGGTTTAGATTTAAAAAATTTTAAGTCGAGATATATCAAATCAATGTGAGAATTTGAACGTATATAAACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End