SE1620013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2694
  • Manihot esculenta
  • SE1620013
  • Mutator
  • M2
  • scaffold09798:113931-114334
  • TTTTCATAG
  • ATAGGGAAAATTACTTTGTAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCTCTCTATTTTGGCGGCCCAACACTTAAATCCTTCACTTTTCTTTCTGTCCAAATTCATAGTCCTTCCATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTC                 G                                                               A            C               A          A    AAAT          ---GACAC   AATTGACAAAATTAACCCTCCTCTTCTTCTTCTTCTTCTTTCTTCTT
     ATAGGGAAAATTACTTT TAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCTCTCTATTTTGGCGGCCCAACACTTAA TCCTTCACTTTT TTTCTGTCCAAATTC TAGTCCTTCC TCCA    AGCCGTTTGG        GTG                                               
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||    ||||||||||        |||                                               C
     TATCCTTTTTAATGAAA ATCAGGGACTCCAAATTGCATTAATTGTGAAGACAGGGAGATAAAACCGCTGGGTTGTGAATT AGGGAGTGAAAG GAAGGCAGGTTTAAG ATCAGGAAGG AGGT    TTGGCAAACC        AGT                                               
ACTTT                 A                                                               C            A               C          C    AAAT          AGTTTCTC   TTTCACTCTACACTACTAAAAAAAGTTTTTACGGGAAGAAAGTTGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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