SE1620014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2695
  • Manihot esculenta
  • SE1620014
  • Mutator
  • M2
  • scaffold08974:103852-104280
  • TATATTAAA
  • AGGGAAATTTACTTTTTAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAAGTCCCTCACTTTCTCTTCCGTCCAAATTCGTAGTCCTTCCGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTAA       T       T                                                                   C         C   C      A  C                TTTAAA        TCAAAAAGTCAAAGGT  G      TAATTTTTTCTA     --      -A    AATGTGAAA   AAGAAGAAGAAGA
        AGGGAAA TTACTTT TAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAAGTCC TCACTTTCT TTC GTCCAA TT GTAGTCCTTCCGTCCA      CCGTTTGG                GA ATGTGA            AAAAT  ACCCTT  TTTC         TTC             
        ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| || ||||||||||||||||      ||||||||                || ||||||            |||||  ||||||  ||||         |||              
        TCCCTTT AATGAAA ATCAGGGACTCCAAATTGTATTAATTGTGAAGACAGGGAGATAAAACCGCTGGGTTGTGAATTCAGG AGTGAAAGA AAG CAGGTT AA CATCAGGAAGGCAGGT      GGCAAACC                CT TGCATT            TTTTA  TGGGAG  GAAG         AAG             
AAATTATA       T       C                                                                   A         A   A      G  A                TTTATC        ----------------  G      ------TAACTG     AT      AA    AAGAAGAAG   AAGAAGAAGAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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