SE1630015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2696
  • Manihot esculenta
  • SE1630015
  • hAT
  • Hat2
  • scaffold03198:133526-133711
  • AATGAGCC
  • CAGGGGCGGAGGGAGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATGAGCC                ----   TTCCCTTT    G    CCACT    -A   CTGCGGCACCACCGGCTGTGCCGCTGCGGCACCTT
        CAGGGGCGGAGGGAGG    AGC        GGTA GGCA     GCGC  CTG                                   
        ||||||||||||||||    |||        |||| ||||     ||||  |||                                    
        GTCCCCGCCTCCCTCC    TCG        CCAT CCGT     CGTG  CGG                                   
CCGAGTAA                CATG   ---TTCCC    G    TCCCC    CA   AATGGCCGCTGTCTTTTTACGAAACTTCCCCCTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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