SE1620017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2698
  • Manihot esculenta
  • SE1620017
  • Mutator
  • M1
  • scaffold10695:159140-159557
  • TTTCTTTTA
  • GGAAAAATTACTATTTAGTCCCTATGGTACAAGGAAACTCGCTAGTTAGTCTCTCAGTTTTGAAAAATGCATTAAAACATTTCTAACATTTTAAAAAGTCTACTAGTTAGTCCCTCTGTTAGTTTTGCTGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTCTTTTA   AA        T               CAA     CTC       A        G            C        A   C    A                        C              -       --TTT   ATTTGCTGCTAAGTATTTTACTATTTATGATTTTGAAAAATTTATTAGTTGTTCCTCC
          GGA  AATTACTA TTAGTCCCTATGGTA   GGAAA   GCTAGTT GTCTCTCA TTTTGAAAAATG ATTAAAAC TTT TAAC TTTTAAAAAGTCTACTAGTTAGTC CTCTGTTAGTTTTG CTGTTAA     GTA                                                          
          |||  |||||||| |||||||||||||||   |||||   ||||||| |||||||| |||||||||||| |||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||     |||                                                          A
          CCT  TTAATGAT AATTAGGGATATCAT   TCTTT   TGATCAA CAGGGAGT AAAACTTTTTAT TAATTTTG AGG ATTG AAAATTTTTCGGATGATCAATCAG GAGGTAATCAAAAT GGTAATT     CGT                                                          
ATTTTCTTTC   -A        T               ACC     AAT       C        A            T        C   A    C                        A              T       CATAA   TTTTTTCAGATTTTACGAGGACTATACTTACTTGATTAATCATTAAAAAAAATTTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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