SE1620018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2699
  • Manihot esculenta
  • SE1620018
  • Mutator
  • M2
  • scaffold04133:120004-120395
  • TATATTATT
  • ATATTATTGGAAAAATTACTTCTTAGTCCCTGAGATTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTGAGTCCCTCACTTTCTCTTCCATTCAAATTCGCAGTCCTTCCGTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
T   T   T      A      C            A                                  G    C    C                         A               C         TTTAAA      G    AAGAG   AAAGTGAGAGGTGATAATTTTGGTCAAAGAGTCAAAAGGGAT
 ATA TAT GGAAAA TTACTT TTAGTCCCTGAG TTTAACGTAATTAACACTTCTGTCCCTCTATTTT GCGA CCAA ACTTGAGTCCCTCACTTTCTCTTCC TTCAAATTCGCAGTC TTCCGTCCA      CCGTTT GTCA     TCA                                          
 ||| ||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||      |||||| ||||     |||                                           
 TAT ATA CCTTTT AATGAA AATCAGGGACTC AAATTGCATTAATTGTGAAGACAGGGAGATAAAA CGTT GGTT TGAATTCAGGGAGTGAAAGAGAAGG AGGTTTAAGCGTCAG AAGGCAGGT      GGCAAA CCCT     GTG                                          
T   T   T      A      A            C                                  G    A    A                         C               A         TTTATC      -    -----   CATTTAACTGTTTTAATTGGGAGTGATTTGAGTTTGGGTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End