SE1630020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2701
  • Manihot esculenta
  • SE1630020
  • hAT
  • Hat2
  • scaffold02960:315861-316040
  • TCGACTGC
  • TCGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
         TGCC  T       CCA    CTTCCCTTT    G    CCACC   -  - AACTGCACTGCTGCGGCACCACCGACTGCGCCGCTGCGGCA
    TCGAC    AG GGCGGAG   GGAG         GGTA GGCA     GGC TG C                                         
    |||||    || |||||||   ||||         |||| ||||     ||| || |                                          
    AGCTG    TC CCGCCTC   CTTC         CCAT CCGT     CCG GC C                                         
CGTC     ----  T       ---    ---------    G    --TCC   T  A AGCAAAGCCGCTGGCCTTTTACGAAACTTCCCCCTACTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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