SE1620021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2702
  • Manihot esculenta
  • SE1620021
  • Mutator
  • M2
  • scaffold03999:872-1373
  • ATATTTTAA
  • GGGAAAATTACTTCTTAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAAATCCCTCACTTTCTCTTGTGTCCAAATTCGTAGTCCTTCCGTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
ATATTTTAA             C                                                                A           CTC  G          C                TTTA          -T  -AA    --CA        AGATGATA   TTT      AATA          AA G GAAA   -C                --------  G       GA   GCAG
         GGGAAAATTACTT TTAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAA TCCCTCACTTT   TT TGTCCAAATT GTAGTCCTTCCGTCCA    AACCGTTTGG  CA   GAGT    AAAGTGAG        ATT   TCCAGA    CCCTTCTCTT  T T    TTC  TTTTTTTTTCTCTTTC        AT TTTTTTT  GTT    
         ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   || |||||||||| ||||||||||||||||    ||||||||||  ||   ||||    ||||||||        |||   ||||||    ||||||||||  | |    |||  ||||||||||||||||        || |||||||  |||     
         CCCTTTTAATGAA AATTAGGGACTCCAAATTGCATTAATTGTGAAGACAGGGAGATAAAACCGCTGGGTTGTGAATT AGGGAGTGAAA   AA ACAGGTTTAA CGTCAGGAAGGCAGGT    TTGGCAAACC  GT   CTTA    TTTTACTT        TGA   GGGTTT    GGGAAGAGGA  A G    AAG  GAAGAAGAAGAGGAAG        TG GAGAAAA  CGA    
AATTTTATA             A                                                                C           TAA  G          A                TTTA          CT  GCA    ACTG        ---GGGAG   TTT      -ACG          AG G -AAG   AA                AAGAAGGA  G       GA   AGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End