SE1650022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2703
  • Manihot esculenta
  • SE1650022
  • PIF/harbinger
  • To2
  • scaffold04584:226866-227377
  • TGT
  • TGTAACAGCTCGGCCCCTTTGCCGGCACTGTTACCGTTCACGGCCCAGGGCTATCCCTCGCCTGGCCTCTTGCCACCTCGGGCTTTCCACTGGCGTCGTGAACAACTCTTAACATCCATTCACCCTCATGGGTTCCTGGCAGGATTTGTCCCCTTGGGTTCTCGCATCGCATCCTTCCCCAAGTGGATTTGGCCCAAATTTCCCTTTGGAAATTAGGTCGCCTCCCCCACTACTCGAACTATTCCC

Secondary structure and sequence

TSD    TIR
5'



3'
TGTA                                                                 C                                      A                                                                    C                           C                                      -----A     TTA
    TGTAACAGCTCGGCCCCTTTGCCGGCACTGTTACCGTTCACGGCCCAGGGCTATCCCTCGCCTGG CTCTTGCCACCTCGGGCTTTCCACTGGCGTCGTGAACA CTCTTAACATCCATTCACCCTCATGGGTTCCTGGCAGGATTTGTCCCCTTGGGTTCTCGCATCGCATC TTCCCCAAGTGGATTTGGCCCAAATTT CCTTTGGAAATTAGGTCGCCTCCCCCACTACTCGAACT      TTCCC   
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      |||||   A
    ACATTGTCGGGTCGGGGAAACGGCCGTGACAATGGCAAGTGCCGGGTCCCGATAGGGAGCGGACC GAGAACGGTGGGGCCCGAAAGGTGACCGCAGCACTTGT GAGAATTGTAGGTAAGTGGGAGTGCCCAAGGACCGTCCTAAACAGGGGAACCCAAGAGCGTAGCGTAG AAGGGGTTCACCTAAACCGGGTTTAAA GGAAACCTTTAATCCAGCGGAGGGGGTGATGAGCTTGG      GAGGG   
TGTC                                                                 A                                      C                                                                    A                           A                                      GAACTG     TGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End