SE1620023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2704
  • Manihot esculenta
  • SE1620023
  • Mutator
  • M2
  • scaffold11526:10392-10872
  • TAAACTCAA
  • AGGGAAAATTACTTTTTAGTCCCTGAGGTTTAACGTAATTAACATTTTTATCCATTTATTTTGGCGATCCAACACTTAAGTCCCTCACTTTCTCTTCCGTTCAAATTCGTAGTCTTTCCGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAACTCA                                               TTA   A                                     CTC   C               C          TTTA          TCAAAGAGTCAAAAGT  G G    TAAT  -     AAAAA   -   TCTCTCAATGTAAAATTTCTATTTTTTTTTCTCTTTCATATTTTCTCCAGTTGAAGA
        AGGGAAAATTACTTTTTAGTCCCTGAGGTTTAACGTAATTAACATTT   TCC TTTATTTTGGCGATCCAACACTTAAGTCCCTCACTTT   TTC GTTCAAATTCGTAGT TTTCCGTCCA    AACCGTTTGG                GA A GTGA    TT TTTCC     TAC CCT                                                         
        |||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||| ||||||||||    ||||||||||                || | ||||    || |||||     ||| |||                                                         A
        TCCTTTTTAATGAAAAATCAGGGATTCTAAATTGCATTAATTGTGAA   AGG AGATAAAACCGCTGGGTTGTGAATTCAGGGAGTGAAA   AAG CAGGTTTAAGCATCA GAAGGTAGGT    TTGGCAAACC                CT T CACT    CT TTTTA     ATT GGA                                                         
AACTCAAA                                               TAC   G                                     TAA   A               A          TTTA          ----------------  A G    -TAA  G     -----   G   GTGATTTGGGTTGAAGAAGAAGAAGAAGGATGGGAAAGACGTTGAAGAAAAAAGAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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