SE1630024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2705
  • Manihot esculenta
  • SE1630024
  • hAT
  • Hat2
  • scaffold02572:187628-187794
  • CAGTGGCG
  • CAGTGGCGGAGCCAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
           T       CCA    CTTCCCTT   T      C GGCTGCGCCGCTGCGGTACCACCGGCTGCGCCGCTGCTGCACCTTCA
        CAG GGCGGAG   GGAA        TGG AGGGCA C                                               
        ||| |||||||   ||||        ||| |||||| |                                               T
        GTC CCGCCTC   CCTT        CCA TGCCGT C                                               
TAAATTTG   C       ---    --------   -      T TCCCCCCGTGCACGGCATGGCCGCTAGCCTTTTACGAAACTTCCCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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