SE1620025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2706
  • Manihot esculenta
  • SE1620025
  • Mutator
  • M1
  • scaffold07229:148207-148608
  • TATAAAATA
  • ATAGGAAAAATTACTACTTAGTTCCTATGGTATGAAAAAACTCACTAGTTAGTCTCTCGATTTTAAAAAGTATATTAAAATGTCTTTGATGTTTTAAAAAATTTACTAGTTAGTCTCTTTGTTAATTTTACTGTTAAATATT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAA      A         CTT                 A             A   T  C A    A      A             T              A    C        CTC             -            TTACTATTT    CTTATAT       --AAAACTT          CTCTC       T
      ATAGGA AAATTACTA   AGTTCCTATGGTATGAA AAACTCACTAGTT GTC CT G TTTT AAAAGT TATTAAAATGTCT TGATGTTTTAAAAA TTTA TAGTTAGT   TTTGTTAATTTTA CTGTTAAATATT         AGTC       TTTTTGA         ATTAGTTGGT     AAATTTT 
      |||||| |||||||||   ||||||||||||||||| ||||||||||||| ||| || | |||| |||||| ||||||||||||| |||||||||||||| |||| ||||||||   ||||||||||||| ||||||||||||         ||||       |||||||         ||||||||||     ||||||| T
      TATCCT TTTAATGAT   TCAGGGATACCATACTT TTTGAGTGATCGG TAG GA C AAAA TTTTTA GTAATTTTGTAGG ATTGTAAAATTTTT AGAT ATTAATTA   AGACAATTAAAAT GGCAATTTATAA         TCAG       GGAGACT         TGATTAATCA     TTTGAAA 
ATAAAA      A         ---                 C             C   -  A C    C      C             C              C    T        AAA             T            ---CATTTT    ATTTTAC       ATGCTTTCC          -----       A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End