SE1630027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2708
  • Manihot esculenta
  • SE1630027
  • hAT
  • Hat3
  • scaffold06609:288855-289531
  • TAAATTAG
  • AATTAGTAGGGGTGTAAACGAATCGAGTCG

Secondary structure and sequence

TSD    TIR
5'



3'
TA    A             C           --  ----   - GT   -  AATACTCAAGTTTGGTTCGTTAAGTAAAATATTTTCGAACTCGAGCTGAATTCGAATTTTACTCATTTTGAACTCGAGTCGAGTATTAATAAGTACAAATTTGGCTCGTTTAGCAAATGAGTTTAGATGAGTTAAGTTTTTATCGAGTTTAGTCTCAAATAATTTTAGTTAAATAAATATATTTACAAATCAGCTCACAGACTTATAAAGATAAACTTTTAAATTTTAATGATTCAAATATATATAAGTTTAAGAGTGTAACTAAATTATATAAAGTTAAATTTTAAAAA
  AATT GTAGGGGTGTAAA GAATCGAGTCG  AA    CCG A  TTT GA                                                                                                                                                                                                                                                                                                  
  |||| ||||||||||||| |||||||||||  ||    ||| |  ||| ||                                                                                                                                                                                                                                                                                                  A
  TTAA CATCTCCACATTT TTTGGTTTAGC  GC    ACT A  GCT TA                                                                                                                                                                                                                                                                                                  
GA    A             A           AA  ACTC   G --   C  AGCTAAGTTATTTTTAAGTTAGCTTAAGCTAAGTTAAAGCATTGCTTGGTTTAAGCTTGAATTAAAAATCTGAGCAAATCATTTACTCGGTTTGAACTTGAGATATTATAAGCCGAGCAATTCTGAGCACTCTAGCCGAGCAATTCTGAGCACTCTAGCTGAGCAAAAACTCAAATACTCATTTGAGTACTTATCTGAGCACTTGTCAGAGCAATTCATTCAACTCTAATAATAATAGTATTAACTTTATTTAAGTTTAGGACGCATATGAAAGTACTGTGTTTAAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End