SE1610028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2709
  • Manihot esculenta
  • SE1610028
  • Tc1/Mariner
  • St1
  • scaffold02455:39427-39706
  • TA
  • TACTCTCTCCGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
              -  T  TTTTTGTCCACTTTGCTTTTTCACACATGTTAAGAAATGCAATTTCTTTTATTAACTTTTTAATTATATTCATCTTAAATATATTAAGTTTAATAAATATTAAGAGATGTTTTGGGAGATT
TACTCTCTCCGTCC CA AA                                                                                                                         
|||||||||||||| || ||                                                                                                                          
ATGAGGGAGGCAGG TA TC                                                                                                                         
              A  -  AAAAAAAAGATAGAAAAGAAAACACCAACAGCGTTTTAATAATAGGTAAAAAGAAAAAATTTTATATTATTGTATATTTAACTGATAATATTGGTATAAATTAAAATAGAATAAAAGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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