Plant MITE

SE1610029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2710
Manihot esculenta
SE1610029
Tc1/Mariner
St1
scaffold05335:688887-689170
TA
TACTCTCTCCGTCCCATAATTTTTGTCCACTTTATTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C  C                    A      CACATATAT     AAGACAATTTTTTTATTAACTTTTCAATTATACCCATCATAGAGATATTATATTTTATTAAATACTAAAAGATGTTTTGAGAGATTTATTGA
TACTCTCTC GT CCATAATTTTTGTCCACTTT TTTTTT         TAAGA                                                                                            
||||||||| || |||||||||||||||||||| ||||||         |||||                                                                                            A
ATGAGGGAG CA GGTATTAAAAACAGGTGGAA AGAAAA         AAATC                                                                                            
         A  A                    A      ---------     AACAGGGTTTTAATAACAAGCGAAAAGGAAAAAAAAATATAATATCATTGTATATTAAATTGATAAGATTGGGATAAATTAAAATAGAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1610029

TACTCTCTCCGTCCCATAATTTTTGTCCACTTTATTTTTTCACATATATTAAGAAAGACAATTTTTTTATTAACTTTTCAATTATACCCATCATAGAGATATTATATTTTATTAAATACTAAAAGATGTTTTGAGAGATTTATTGAAAATAAGATAAAATTAAATAGGGTTAGAATAGTTAAATTATATGTTACTATAATATAAAAAAAAAGGAAAAGCGAACAATAATTTTGGGACAACTAAAAAAAGAAAAGGTGGACAAAAATTATGGAACAGAGGGAGTA

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