SE1620030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2711
  • Manihot esculenta
  • SE1620030
  • Mutator
  • M5
  • scaffold06034:34828-35175
  • GAACATATT
  • GGCAAAATGCATAATTTGCCCCTCACCTTTACATAAAAAGTCATTTTATCCCCTAAACTTTAACTTTGTCCTATTTACTCTTTCAACTTTCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACATATTA   A             GC           AC   A     C            AAA     AC                   C   T  C    GGTAAA    C          CAACTAACA       TTCACGCGCTACCACATCATAGGAATTATGTTATTC
          GGC AAATGCATAATTT  CCCTCACCTTT  ATA AAAGT ATTTTATCCCCT   CTTTA  TTTGTCCTATTTACTCTTT AAC TT AAAT      ATAA TTAATCTCTA         TGTGATG                                    
          ||| |||||||||||||  |||||||||||  ||| ||||| ||||||||||||   |||||  ||||||||||||||||||| ||| || ||||      |||| ||||||||||         |||||||                                    A
          CCG TTTACGTATTAAA  GGGAGTGGAAA  TAT TTTCA TAAAATGGGGGA   GAAAT  AAATAGGATAAATGAGGAA TTG AA TTTA      TATT AATTAGAGAT         TCTCACT                                    
ATTATACAAG   G             AA           AA   C     T            GTC     AA                   A   T  A    -AAAAC    A          --------A       CTTTTACATGTATAGTGGGGAAATTGAAAATTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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