SE1630031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2712
  • Manihot esculenta
  • SE1630031
  • hAT
  • Hat3
  • scaffold12414:184191-184896
  • CTGGTAAT
  • CTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
         AATT                 AAACC   -  -     TATTCGAGGTTCGATTCGATAAAAGCTCGACCGAGCTTGACTCGATTTCTAAACGAGCCAAGTTCGAGCTTAATTTTTAGGCTCGTTTGGTAAACGAGATAAGCTTAAGCTCCATAGTATTCGGCTCGTTAAGGCTTGTGAGCTCGGCTTGTTTCTGAGTTCATGAGCAGGCTCGCGAATAGGCTCGTGAACAGTCTCGTTAAGTAAACTGAAATTACTATCATAAGAGAAATAAACTCAAACCCTGCATATACTTTCATGAACCAAATTTAAATTTTTTAAAATTCAGCTCTATATAGTTTAGTTACACT
    CTGGT    AGGGGTGTAAATGAACC     GTT CG TGAGC                                                                                                                                                                                                                                                                                                                       
    |||||    |||||||||||||||||     ||| || |||||                                                                                                                                                                                                                                                                                                                       C
    GGTCA    TCCCCATATTTGCTTGG     GCT GG TCGAA                                                                                                                                                                                                                                                                                                                       
TAAT     ----                 -CTCA   C  C     ACTTCTCAAATTTGAACCAAGCAATTTTAAAAAAGCTCGAGCTCGGCTTAAACTCAAAATGAGTATAGCTTGAGCTCGGCTCATAATTCTTCGAGTTCGAACCGAGCAAATCGTTTGCTCGAATCTGCTCAGCTCGAAAATAGCTCGACTCAGAGCTTATCAAGTGCTCATTAAATTAAATAAATATACATATTACTCAAAATCAAATTTTGATTTTATTAAAATCAATTTATTCATATAGATGTTTAATCGTACATTTGAATATTTCTACTCAAAAATTTAGAATTACTAAGTTTATATACGTTCAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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