SE1630032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2713
  • Manihot esculenta
  • SE1630032
  • hAT
  • Hat3
  • scaffold06960:183633-184344
  • CCAATCAA
  • TAGGGGTGTAAATGAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAATCAA                  A     ---       GCTATTCGAGATTCGATTCGATAAAAGCTCGACCGAGCTTGACTCGATTTCTAAACGAGCCAAGCTCGAGCTTAATTTTTAGGCTTGTTTGGTAAATGAGCCAAGCTTGAGCTCCATAGTATTCGGCTCGTTAAGGCTCGTGAGCTCGGCTCGTTTCTGAGTTCATGAGCAGACTCGTGAATAGGCTCGTGAACGGTTAAACTGAAATTACTATCATAAGAGAAATAAACTCAAACCCTGCATATATTTTAATGAGCCAAATCTAAATTTTTTAAAATTCAGCTCTATATAGTTTAGTTACATTCTTAAACTTGCA
        TAGGGGTGTAAATGAACC AACCG   TTCGTGA                                                                                                                                                                                                                                                                                                                            
        |||||||||||||||||| |||||   |||||||                                                                                                                                                                                                                                                                                                                             
        ATCCCCACATTTGCTTGG CTCGG   GGCTCGA                                                                                                                                                                                                                                                                                                                            
AACTAACC                  -     CTC       AACTTCTCGAGTTCAAACCAAGCAATTTTAAAAAAGCTCAAGCTCGGCTTAAGCTCGAAATGAGTATAGCTTGAGCTCGGCTCATAATTCTTCAAGTTCAAACCGAGCAAATCGTTTGCTCGAATCTGCTCAGCTCGAAAATAGCTCGACTCAGAGCTTATCAAGTGCTCGTTAAATTAAATAAATGTACATATTACTCAAAATCAAATTTTGATTATTCAAATTTTAATTTTATTAAAATCAATTTATTCATATAGATGTTTAATCGTACATTTGAATATTTCTACTCAAAAATTTAGAATTACTAGGTTTATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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