SE1620033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2714
  • Manihot esculenta
  • SE1620033
  • Mutator
  • M6
  • scaffold09365:106153-106594
  • AATATATAA
  • ATATATAAGGGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      AA       -----------------G    C   AATCCTTGTGGGTATGGAAAAACTCATTGGTTGATCTCTCAATATGAAAAACACATTAAAACATTACTAAGGTTGAAAAGTCTAGTAATTAGTCCCTCTATTAATTTTAGTCGTTAAATATTGAAGAAAGTCTAAAAATACCTCAAACACGGAAAAACTAATTAGTAGACTTTTTTTTTTAAACCTTA
  ATATAT  GGGAAAA                  TACT TTT                                                                                                                                                                                            
  ||||||  |||||||                  |||| |||                                                                                                                                                                                             
  TATATA  CCCTTTT                  CCGT ACT                                                                                                                                                                                            
AA      -A       AACGATAAATCAAATATA    -   ATTTTGAGTAAACAAACAGTAAACTAAAACTTTTTATGTAATTTTGGATAAACTCCAAAATTTTTTTAATGATTAATTGGGAAAGTAATTAAAAACCGGAAATTCACAAATGATAAATCAGGTACACCACACCCTTTTAAGTAGCCATTAACCAGAGAATCAAAATTTTTTAATATAATTCTGTAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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