Plant MITE

SE1610034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2715
Manihot esculenta
SE1610034
Tc1/Mariner
St2
scaffold06631:353459-353758
TA
TACTCCCTCTGTCCCATAA

Secondary structure and sequence

TSD TIR

5'

3'

     C             TTTTTTTC  TCTTTCATTTTCTGGTTGTCTCAAAATTATTGTCCACTTTATTTTTTAGACTATACTAACATATAAATTAGACTATAGTAATATATAAATTGACTATTATACCCTATTTAATTATCTCTTATT
TACTC CTCTGTCCCATAA        CC                                                                                                                           
||||| |||||||||||||        ||                                                                                                                           T
ATGAG GAGGCAGGGTATT        AA                                                                                                                           
     A             -----TAA  CAGGTGAAATGAAAAAGTGTATATAATTCTTTATGTTAAAAAAAATAATTGAAAGGTTAATGTGGGCAAAATTTATATAATTTGAAATGATTTATGATTCTCTATAAAATTTTCCAAAGAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1610034

TACTCCCTCTGTCCCATAATTTTTTTCCCTCTTTCATTTTCTGGTTGTCTCAAAATTATTGTCCACTTTATTTTTTAGACTATACTAACATATAAATTAGACTATAGTAATATATAAATTGACTATTATACCCTATTTAATTATCTCTTATTTCCAAGAAACCTTTTAAAATATCTCTTAGTATTTAGTAAAGTTTAATATATTTAAAACGGGTGTAATTGGAAAGTTAATAAAAAAAATTGTATTTCTTAATATATGTGAAAAAGTAAAGTGGACAAAATTTATGGGACGGAGAGAGTA

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