SE1630035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2716
  • Manihot esculenta
  • SE1630035
  • hAT
  • Hat1
  • scaffold06446:725448-725924
  • GCCATAGT
  • GTTAGGGGTGAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCATA              GTA    TTTTAAATCGAAAAAATTGACCGAACCGAACTGATTTGAAAATTTAGTTTGGTTTTTTATATATTTCGGTTCGGTTCGATTTTTAATTTCAGAAATTTCAGTTATTTCGGTTCGGTTCGGTTTTAATCAGAAAAAACCAAAAAAATTGAACCGAATCGATTAGTGATAATAATATATTTTTATTAAATCATATTAAAATTAAAATATTTTAA
      GTTAGGGGTGAGCA   TTCG                                                                                                                                                                                                                    
      ||||||||||||||   ||||                                                                                                                                                                                                                    T
      CGATCCCCACTCGT   AGCC                                                                                                                                                                                                                    
TGATAC              --A    AGCCAAGCCAAGTTTTGGCTTGGTGGCTTGGCTTGGCTTATTTGGCTTTTGACTTTAAAATCACAAATACTTTTAGCTTGGCTTAGCTAAAACTAGTCTTTAGCTTAGCTTAGCTTGACCAGACTAAGCTAAGTCAAGCTAAGTCAAACTAGCCAAAGCTAAAAATTAATTAAAAAATAAAAATATAAAATAAAAATTATAAAATTTTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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