Plant MITE

SE1630036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2717
Manihot esculenta
SE1630036
hAT
Hat2
scaffold00069:272835-272996
CTTTTAGC
CTTTTAGCCAGGGGCGGAGGGAGG

Secondary structure and sequence

TSD TIR

5'

3'

   TTT   C               -     -----  --- A GGGGCACGTGCCGTACCGGCGACCGGAAAATGCTTTGAAGGGG
 CT   AGC AGGGGCGGAGGGAGG GTACG     GC   A G                                           
 ||   ||| ||||||||||||||| |||||     ||   | |                                            
 GA   TCG TCCCCGCTTCCCTCC TGAAG     CC   C C                                           
C  TTT   -               T     GGAAA  ATC - GTGGCGACGCCGTGGTGGTCGACGCGGCGACGCCGTGGAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1630036

CTTTTAGCCAGGGGCGGAGGGAGGGTACGGCAAGGGGGCACGTGCCGTACCGGCGACCGGAAAATGCTTTGAAGGGGATGAAGGTGCCGCAGCGGCGCAGCTGGTGGTGCCGCAGCGGTGCCCTACCAAAGGGAAGTTCCTCCCTTCGCCCCTGCTTTTAGC

Copy Cancel