Plant MITE

SE1650038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2719
Manihot esculenta
SE1650038
PIF/harbinger
To1
scaffold08799:507879-508114
TAA
AGGGCCTGTTTGGCATTGCTGTTAGTGCT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 ----------    --TT      ------------    TGAGAAAAGCACTTTATTAAAAATACTATTTAGAAAGTATTAAAAAATAATTTAAAATTATTTTTGACATA
  AGGGCCTGTTTGGCATT          GCTG    AGTGCT            GTGT                                                                       
  |||||||||||||||||          ||||    ||||||            ||||                                                                        
  TCTCGGACAAACTGTAA          CGAT    TCACGA            GTAG                                                                       
AA                 TTCAAACCTT    CTTT      AAAATCTTTTTT    TTAAAATCTACTACAATTTTTTTCGTCAAACCCTTTCAACAAAACAATAAAAATATAAGAATATCGATTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1650038

TAAGGGCCTGTTTGGCATTGCTGTTAGTGCTGTGTTGAGAAAAGCACTTTATTAAAAATACTATTTAGAAAGTATTAAAAAATAATTTAAAATTATTTTTGACATAGTTTAGCTATAAGAATATAAAAATAACAAAACAACTTTCCCAAACTGCTTTTTTTAACATCATCTAAAATTGATGTTTTTTCTAAAAAGCACTTTTCTAGCTTCCAAACTTAATGTCAAACAGGCTCTAA

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