SE1630039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2720
  • Manihot esculenta
  • SE1630039
  • hAT
  • Hat6
  • scaffold03631:33243-33692
  • TTTGTGTT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     TC CTGATACTCAGACTCTTCATTTTGCCATGCCGTACCCGTATCGATATGACACTTCATGGGATACGACATGGAATATGTGTCCGACATATTTGTGCACATGGAGACTTGAGTGATATATTCATGCATAGTTAATAGGATATTATTTTCTCCAAAATGAAGCGCATATATTAAGATAAAAAAAATTATTTGATTGTATTTTGGATGATGTATGTGGTTG
  TGTGT  T                                                                                                                                                                                                                         
  |||||  |                                                                                                                                                                                                                          
  TTGTG  T                                                                                                                                                                                                                         
       -- TTGATACAATGAACTTGAGCCTTTGCTCACAGTTTTTACACACGTATAGAGGTACAGATCGAACAGTTGAAAAATTTATATTTTATGACCTTATACTTAGATTCAAATTTACGCCCCCGAATGTATATAATATCATATTTTTTATTTAATCTTAAAATTATTTTTTTTTATATTTCAATTATATCATTATTAATATCAAATTTATCTACTAGTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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