SE1620040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2721
  • Manihot esculenta
  • SE1620040
  • Mutator
  • M8
  • scaffold03542:506780-507274
  • CATGTATTT
  • GGCTGAATATATACTTGCACCCCTATAGTAATTGGAATTATTCTATTTAACACTTAGAACTAAAATTGTAACCTATTCAACACT

Secondary structure and sequence

TSD    TIR
5'



3'
CATGTATTTC    -G        C   C     T  AG  A  G A    T  TA  T       A   C     T         TTC      TGGT A           T             ------A      --- TATATTATTGATAATTTATTGAAAAAAAAAAGTAAAAACTTGATCACACATATTGTTGACTGCATGATAAATTTTGCTGATTGTGCTTTGAATTTTTGTAAATTGACAAAG
          GGCT  AATATATA TTG ACCCC AT  TA TT G ATTA TC  TT AACACTT GAA TAAAA TGTAACCTA   AACACT    C TATAAAAATCA AATAATTAAACAC       TATTAG   T                                                                                                               
          ||||  |||||||| ||| ||||| ||  || || | |||| ||  || ||||||| ||| ||||| |||||||||   ||||||    | ||||||||||| |||||||||||||       ||||||   |                                                                                                                
          CCGG  TTATGTAT AAT TGGGG TA  AT AA T TAAT GG  AA TTGTGGA CTT ATTTT ATATTGGAT   TTGTGG    G GTGTTTTTAGT TTATTAATTTGTG       TGTATA   A                                                                                                               
 CTTTATGTA    GT        A   C     -  AG  A  G G    T  TC  T       -   T     T         TAC      TTTT A           T             ATCAATT      ATA CAACTGAACAGTTTTTCTCGGTCTTTAACTTAGTTAAACATCGATTAACATGAGATTTAAAACAACTAACCGAAATTTAAAAGTATTTTACTATTTTAATAACAGCAGATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End