SE1620041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2722
  • Manihot esculenta
  • SE1620041
  • Mutator
  • M1
  • scaffold09460:26339-26738
  • TTTAATTAA
  • TTAATTAAGGAAAAACTACTACTCCCTATGGTGTGAAAAAACTCATTAGTTAGTCTCTTGATGTTGAAAAATATATTAAAACGTCCCCGATATTTTAAAAAGTCTACTAGTTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
T              AC    A  ----C                           A          G                     C CC            A              CCACCCTTTA     -T     -------A    TTTTACTATTAGTCCCTATGATTTTGAAAAACTTATTAGTTGGTCCTTCATA
 TTAATTAAGGAAAA  TACT CT     CCTATGGTGTGAAAAAACTCATTAGTT GTCTCTTGAT TTGAAAAATATATTAAAACGT C  GATATTTTAAAA GTCTACTAGTTAGT          ATTTT  TCGTT        AGTA                                                    
 ||||||||||||||  |||| ||     ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |  |||||||||||| ||||||||||||||          |||||  |||||        ||||                                                    T
 AATTAATTCTTTTT  ATGA GA     GGATATTATATTTTTTTGAGTAATCAA CAGAGAGTTA AACTTTTTATGTAATTTTGCA G  CTGTAAAATTTT CAGATGATCAATCA          TAAAA  GGCAA        ATTT                                                    
T              CA    A  ATTAA                           C          A                     A TA            -              AAAAGACAAA     TT     CTTACAAT    TTTTAGGTTTTACGGGGAATATGCATCCCTAACTAATTATTTGAAAAAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End