Plant MITE

SE1650042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2723
Manihot esculenta
SE1650042
PIF/harbinger
To3
scaffold07035:66990-67186
TTA
CCCTCATTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TTAC     -A     CACGATT          G  AATAT     -AT   T   -    AACTCATGCAAGATTTCTACAATGCAGGTTTTTCAAGTTAAA
    CCCTC  TTTGG       GGTTTTGCAA AA     TTCAA   GAA TCT TGTA                                          
    |||||  |||||       |||||||||| ||     |||||   ||| ||| ||||                                          A
    GGGAG  AAACC       TTAAAGCGTT TT     AAGTT   TTA ACT AAGA                                          
 ATT     AC     TTTATTC          G  -----     AAG   -   A    AAAGATTATTAAAAGAATAAACCTCCCTTTCTTAAGTTAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1650042

TTACCCCTCATTTGGCACGATTGGTTTTGCAAGAAAATATTTCAAATGAATTCTTGTAAACTCATGCAAGATTTCTACAATGCAGGTTTTTCAAGTTAAAAAGAATTGAATTCTTTCCCTCCAAATAAGAAAATTATTAGAAAAGAAATCAATTGAATTGAATTGTTGCGAAATTCTTATTTCCAAACAGAGGGTTA

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