SE1620043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2724
  • Manihot esculenta
  • SE1620043
  • Mutator
  • M1
  • scaffold11874:38367-38767
  • TATTAATAA
  • TATTAATAAGGAAAAATTACTACTTAATCCCTATAGTATGGAGAAATTCACTAGTTAATCCATTAATTTAAAAAATATATTAAAACGTCTCTGACATTTTAAAAATCTATAGTTAGTATCTCCGTTAGTTTTAGCCGTTAAGTATTATA

Secondary structure and sequence

TSD    TIR
5'



3'
         A      A      C   A  C    A T                    A   A  A    A               C    C              -     -       A        A     A C      G    A  AAAAAGT   AAAT       AT  --A      CTA      -AAA     TAAA
 TATTAATA GGAAAA TTACTA TTA TC CTAT G ATGGAGAAATTCACTAGTTA TCC TT ATTT AAAAATATATTAAAA GTCT TGACATTTTAAAAA TCTAT AGTTAGT TCTCCGTT GTTTT G CGTTAA TATT TA       CTA    GTCCCTA  AT   GAAGGA   ATTAGT    CTTTT    
 |||||||| |||||| |||||| ||| || |||| | |||||||||||||||||||| ||| || |||| ||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||| ||||| | |||||| |||| ||       |||    |||||||  ||   ||||||   ||||||    |||||     
 ATAATTAT CTTTTT AATGAT AAT AG GATA C TACCTTTTTGAGTGATCAAT AGG AA TAAA TTTTTATATAATTTT TAGG ATTGTAAAATTTTT AGATA TCAATCG GGAGGCAA TAAAA C GTAATT ATAA AT       GAT    CAGGGAT  TA   CTTTTT   TAATCA    GGGAA    
A        -      C      A   C  A    C C                    C   A  C    A               T    A              C     A       A        C     - T      A    A  -------   ACAT       AT  AAA      AAA      ACCA     TCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End