Plant MITE

SE1610044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2725
Manihot esculenta
SE1610044
Tc1/Mariner
St2
scaffold06631:353459-353758
TA
TACTCTCTCCGTCCCATAAATTTTGTCC

Secondary structure and sequence

TSD TIR

5'

3'

         C         A    G   ACTTTA        CATA  T   GAAATACAATTTTTTTTATTAACTTTCCAATTACACCCGTTTTAAATATATTAAACTTTACTAAATACTAAGAGATATTTTAAAAGGTTTCTTGGAAATAAG
TACTCTCTC GTCCCATAA TTTT TCC      CTTTTTCA    TA TAA                                                                                                      
||||||||| ||||||||| |||| |||      ||||||||    || |||                                                                                                      A
ATGAGGGAG CAGGGTATT AAAA AGG      GAGAAAGT    AA GAC                                                                                                      
         A         A    A   ------        --AA  -   CAACAGAGTTTTAATAACAGGTGAAATAAAAAATCTGATATGATTGTATATTTAATCTGATATCATTATATATTTAACTGATAATATGGGATAAATTAATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1610044

TACTCTCTCCGTCCCATAAATTTTGTCCACTTTACTTTTTCACATATATTAAGAAATACAATTTTTTTTATTAACTTTCCAATTACACCCGTTTTAAATATATTAAACTTTACTAAATACTAAGAGATATTTTAAAAGGTTTCTTGGAAATAAGAGATAATTAAATAGGGTATAATAGTCAATTTATATATTACTATAGTCTAATTTATATGTTAGTATAGTCTAAAAAATAAAGTGGACAATAATTTTGAGACAACCAGAAAATGAAAGAGGGAAAAAAATTATGGGACAGAGGGAGTA

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