SE1630045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2726
  • Manihot esculenta
  • SE1630045
  • hAT
  • Hat2
  • scaffold08261:85390-85563
  • AACACAAT
  • TCAGTGGCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AACACAA    T       -TCA    TTTCC     - TAGGGCATCGGCTGCGCCGCTGCGGCACTACCGGCTACGCCGCTGCGGCAC
       TCAG GGCGGAG    GGAG     CTTTG G                                                   
       |||| |||||||    ||||     ||||| |                                                   C
       AGTC CCGCCTC    CCAT     GCCGT C                                                   
TAACACA    C       CCTT    -----     T CCCCCCGTGCACGGCATGGCCGCTGGCCTTTTACGAAACTTCCCCCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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