Plant MITE

SE1610046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2727
Manihot esculenta
SE1610046
Tc1/Mariner
St1
scaffold01608:275979-276254
TA
TACTCCTCCGTCACATAATTTTTGTC

Secondary structure and sequence

TSD TIR

5'

3'

      -      AC            CACTT          CAC     AAGAAATATAATTTTTTATTAACTTTCCAATTATTCCCATCTTAAATACATTAAGTTTTATTAAATACTAAGGATATTTTGAGAGATTTTTT
TACTCC TCCGTC  ATAATTTTTGTC     TGTTTTTTCT   ATATT                                                                                            
|||||| ||||||  ||||||||||||     ||||||||||   |||||                                                                                            G
ATGAGG AGGCAG  TATTAAAAACAG     ATAGAAAAGA   AAGAA                                                                                            
      G      GA            -----          ---     ATAACAAGGTTTTAATAACAGGTGAAAGAAAAAAATCTGATATTATTATACATTTAACAGATAATATTGGGGTAAATTAAAATAAAATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1610046

TACTCCTCCGTCACATAATTTTTGTCCACTTTGTTTTTTCTCACATATTAAGAAATATAATTTTTTATTAACTTTCCAATTATTCCCATCTTAAATACATTAAGTTTTATTAAATACTAAGGATATTTTGAGAGATTTTTTGAAAATAAAATAAAATTAAATGGGGTTATAATAGACAATTTACATATTATTATAGTCTAAAAAAAGAAAGTGGACAATAATTTTGGAACAATAAAGAAAGAAAAGATAGACAAAAATTATAGGACGGAGGGAGTA

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