SE1620048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2729
  • Manihot esculenta
  • SE1620048
  • Mutator
  • M1
  • scaffold03750:743392-743797
  • TATATAATA
  • ATAGAGAAAATTACTATTTAGTTCCTATGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATATA    A                          ATGAAA                    C             A  A        C C   C                        C         A    -  A     T    TTACTATTT    -CC    -A     -AAGAACTT          CCATCA      TA
      ATAG GAAAATTACTATTTAGTTCCTATGGT      AAATTCACTAGTTAGTCTCT AGTTTTGAAAAAT CA TAGAACGT C TGA ATTTTAAAAAGTCTACTAATTAAT CGTTCGTTA TTTT GC GTTAA TATT         AGTC   TATG  TTTTA         ATTAGTTGGT      AAATTT  
      |||| ||||||||||||||||||||||||||      |||||||||||||||||||| ||||||||||||| || |||||||| | ||| |||||||||||||||||||||||| ||||||||| |||| || ||||| ||||         ||||   ||||  |||||         ||||||||||      ||||||   
      TATC CTTTTAATGATGAATCAGGGATATCA      TTTGAGTGATCAATCAGAGA TTAAAACTTTTTA GT ATTTTGCA G ACT TAAAATTTTTTAGATGATTAATTA GTAAGCAAT AAAA CG CAATT ATAG         TCAG   ATAC  AAAGT         TGATTAATCA      TTTGAA  
ATAATA    C                          CATCTA                    A             C  A        T T   A                        A         C    T  G     C    --TATTTTT    ATT    AG     ATGCCTCCC          ------      AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End