SE1630053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2734
  • Manihot esculenta
  • SE1630053
  • hAT
  • Hat7
  • scaffold09260:378052-378531
  • CATTTCAC
  • TAGGGCTGTGCAATCGGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTCAC     CT T   ---A        --       TCAAACCGAACCGATAAAATTGAAAATCGAAATGTTAAAATTTTAAAAACTGAAAAAACCGATTATGAAGATATAACCGAACTGAATCGAACCGATAAAAATCGGTTCAGTTCGGTTCAATTCGGTTCAAACCGAAATCTGCTGGGTTGGACTTGGGGCCGGAAAGGGATGGAGGGGTTGGGGTGCTGGGTTGGGTACGAG
        TAGGG  G GCA    TCGGTCGG  TTCGGTT                                                                                                                                                                                                         
        |||||  | |||    ||||||||  |||||||                                                                                                                                                                                                         A
        ATCCC  C CGT    AGCCAGAT  GGCTTTT                                                                                                                                                                                                         
CACTTTAC     CT T   ATAA        TT       TGGCTTGGCTTGGCCAACTAAAGCCAAAAAACCAAACCAAAAAGCCTTATTAGTCAAACCAAGCCAATTATATAAATTTTAAAAAGCTAAAAGCCAAGCCAAGCCAAATTTGTACAATTTATTAGCTAGTTTAGCTTTTTAGCTAAATCACCGATCCGGGTTCGGGTTCGGGTTTGGGCTCGGGTTCGGGAGGAAGACCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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