Plant MITE

SE1630054

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2735
Manihot esculenta
SE1630054
hAT
Hat2
scaffold06762:24970-25117
AATACAAG
CAGTGGCGGAG

Secondary structure and sequence

TSD TIR

5'

3'

AATACAAG   T       ----       CTTCC  - TGATAGGGCATCGGCTGCGCCACTGCGGCACCTTCATACC
        CAG GGCGGAG    TCAGGAG     CT T                                        
        ||| |||||||    |||||||     || |                                         
        GTC CCGCCTC    CCATGCC     GT C                                        
GAACATAA   C       CTTT       -----  T CCCGTGCACGGCATGGCCGCTGGTCTTTTACGAAACTTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1630054

AATACAAGCAGTGGCGGAGTCAGGAGCTTCCCTTTGATAGGGCATCGGCTGCGCCACTGCGGCACCTTCATACCCCTTCAAAGCATTTTCTGGTCGCCGGTACGGCACGTGCCCCTTGCCGTACCTTTCCTCCGCCCCTGAATACAAG

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