Plant MITE

SE1630055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2736
Manihot esculenta
SE1630055
hAT
Hat2
scaffold05214:546299-546472
ATTACTTG
CAGGGGCGGAGGGAAGGTACAGCAAGGGGGGGCACGTGCCGTACCGGCGACCG

Secondary structure and sequence

TSD TIR

5'

3'

ATTACTTG   G       GGA   TA AG --AAG  -       -----       AC    G    AAAAA   T   AA G  G  GA
        CAG GGCGGAG   AGG  C  C     GG GGGGCAC     GTGCCGT  CGGC ACCG     TGC TTG  G GG AT  
        ||| |||||||   |||  |  |     || |||||||     |||||||  |||| ||||     ||| |||  | || ||   
        GTC CCGCCTC   TCC  G  G     CC TCCCGTG     CGCGGCG  GCCG TGGT     ACG AGC  C CC TG  
GTTCATTA   A       -GG   TC AA GGAAA  A       GCCGA       AC    -    GGCCG   C   GA G  G  GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1630055

ATTACTTGCAGGGGCGGAGGGAAGGTACAGCAAGGGGGGGCACGTGCCGTACCGGCGACCGAAAAATGCTTTGAAGGGGGATGAAGGTGCCGCAGCGACGCAGCCGGTGGTGCCGCAGCGGCGCAGCCGGTGCCCTACCAAAGGGAAGCTCCTGGCTCCGCCACTGATTACTTG

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