SE1630056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2737
  • Manihot esculenta
  • SE1630056
  • hAT
  • Hat2
  • scaffold07229:348325-348474
  • ATTGAACC
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
AT     -  ----   ------    G    A - AGCTTCCCTTTGGTAGGGCACCGGCTGCGCCGCTGCGGCACCTTCA
  TGAAC CC    AGT      GGCG AGCC G G                                              
  ||||| ||    |||      |||| |||| | |                                               
  AAGTT GT    GCC      CCAT GCCG T C                                              
CC     A  CCCC   TTCCTT    -    - T CCCCCGTGCACGGCATGGCCGCTGGCCTTTTACGAAACTTCCCCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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