SE1620057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2738
  • Manihot esculenta
  • SE1620057
  • Mutator
  • M1
  • scaffold10689:694388-694785
  • TTAAATTTT
  • AAATTTTGGAAAATTAATTATTTAGTCTACATGGTATGCCAAAATTCACTAGTTGGTCTCTCTATTTAAAAAAAAAGCATTAAAACATCCTTGATATTTTAAAATGTCTATTATTTAGTCTTTCCATTTATTTTTACCGTTAAGTATTATA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      --T         A           AC        CC    T   C            C     A      AA          A      A          T        T     C        T     TAC    AA     A  AAAAA     AAATA  -TCATATA        A      - GA    T
  AAATTT   GGAAAATTA TTATTTAGTCT  ATGGTATG  AAAA TCA TAGTTGGTCTCT TATTT AAAAAA  GCATTAAAAC TCCTTG TATTTTAAAA GTCTATTA TTAGT TTTCCATT ATTTT   CGTT  GTATT TA     GTTTA     CT        GAGAGATT ATTAGT A  CTTT 
  ||||||   ||||||||| |||||||||||  ||||||||  |||| ||| |||||||||||| ||||| ||||||  |||||||||| |||||| |||||||||| |||||||| ||||| |||||||| |||||   ||||  ||||| ||     |||||     ||        |||||||| |||||| |  |||| T
  TTTAAA   CCTTTTAAT GATGAATCAGG  TACCGTAC  TTTT AGT ATCAACTAGGGA ATAAA TTTTTT  TGTAATTTTG AGGGAC GTAAAATTTT TAGATGAT AATTA GGAGGTAA TAAAA   GTAA  CATAA AT     CAAAT     GA        CTTTTTAA TAATCA T  GGAA 
 T      TTC         -           AA        TA    T   A            A     A      -A          C      C          T        T     A        T     TCA    CA     A  ---GA     -CAGG  TATCAAAA        G      A AG    A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End