SE1620058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2739
  • Manihot esculenta
  • SE1620058
  • Mutator
  • M1
  • scaffold03120:180526-180929
  • TTAATTTTA
  • GAAAAATTACTATTTAGTCCCTATAATATGAAAAAACTCACTAGTTAGTCTCTCGATTTTGAAAAATATATTAAAATGTCCCTGACATTTTAAAAAGTCTACTACTTAGTCCTTCTGTTAATTTTGCAATTAAATATTTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTAATTTTA                   CC   AA          C                  A                         C                      C       TTC     A   T  A     A    TTA TATTT    -------  TATAATTTTGAAAAACTGATTAGTTGATCCCTAAAAT
          GAAAAATTACTATTTAGTC  TAT  TATGAAAAAA TCACTAGTTAGTCTCTCG TTTTGAAAAATATATTAAAATGTCC TGACATTTTAAAAAGTCTACTA TTAGTCC   TGTTA TTT GC ATTAA TATT   C     AGTC       CA                                     
          |||||||||||||||||||  |||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||   ||||| ||| || ||||| ||||   |     ||||       ||                                      
          CTTTTTAATGATAAATTAG  ATA  ATACTTTTTT AGTGATCAATCAGGGAGT AAAATTTTTTATATAATTTTGCAGG ATTGTAAAATTTTTCAGATGAT AATCAGG   ACAAT AAA CG TAATT ATAA   G     TCAG       GG                                     
ATTTTAATTC                   AA   CC          A                  C                         A                      C       TAA     C   T  G     C    --C TTTTT    ATTTTAC  GGACTATGTCTCCCTGATTAATCAATTGAAAAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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