SE1620059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2740
  • Manihot esculenta
  • SE1620059
  • Mutator
  • M9
  • scaffold00428:99348-99776
  • GTGTTTGAA
  • GGCCAAATGTATACTTGCACACTTGTACTTTAGCATTTTTGCCTATTAGACACCTCAACTTTAATTGTGACCTAATAAACATCTAAACTTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGTTTGAA   C                                     C          C                         A                AATTAC       CACCTAAATTTAAAAAAAAAAAAATATTTTAAACACCTAAACTTTTTAAAATAATTACTTTTAAACACAACTTTAAAACTATGGATTTGAAAAATTAC
         GGC AAATGTATACTTGCACACTTGTACTTTAGCATTTTTG CTATTAGACA CTCAACTTTAATTGTGACCTAATAA CATCTAAACTTTAAAA      TTTTAAA                                                                                                  
         ||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||      |||||||                                                                                                  T
         CCG TTTACGTATGAACGTGTGGACATGAAATCGTGAAAGT GATAGTCTGT GAGTTGAAATTAGCACTGGATTATT GTGGATTTGAAATTTT      TAATGAA                                                                                                  
AAGTTTGTA   A                                     C          A                         C                --ATTA       AATTTGTGTTGAAGCGGTTTAGGTACCAAAATTTCAATACAAATTTTTATTAAAAAGTTTAAATACCAATTTAGTTACCAAAATTTCAACATAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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