SE1630060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2741
  • Manihot esculenta
  • SE1630060
  • hAT
  • Hat2
  • scaffold08475:106064-106217
  • TCTTTAGT
  • CTTTAGTCAGTGGCGGAGCCAGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T  TT  T   T       CCA    CTTCCCTTT    G    -CAACT   -  C    CTG    -   TTCATCCCCCTT
 CT  AG CAG GGCGGAG   GGAG         GGTA GGCA      GGC TG GCCG   CGGC ACC            
 ||  || ||| |||||||   ||||         |||| ||||      ||| || ||||   |||| |||            C
 GA  TC GTC CCGCCTC   CCTC         CCAT CCGT      CCG GC CGGC   GCCG TGG            
T  TT  T   C       ---    ---------    G    TCCCCC   T  A    ATG    C   CTTTTTACGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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