SE1720001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2742
  • Ricinus communis
  • SE1720001
  • Mutator
  • M1
  • 30005:363278-363627
  • TAAACACAA
  • AGGCCAAATGCATATTTATGTCTCTGAGCTTGTATCGATTAGTCAATTTAACACTTTAACTTTCGATTTAACCTAACAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAACACA                 A             GTA   A     CAA     C         T     TT   C        AACT   -   ATCTTTTTAATATCCAAACACCTTTAACTTTCAATTTAATCTGACATACACCTGAACTTTATTTTTAATAATATTTAA
        AGGCCAAATGCATATTT TGTCTCTGAGCTT   TCG TTAGT   TTTAA ACTTTAACT TCGAT  AAC TAACAGAC    GAT TTT                                                                              
        ||||||||||||||||| |||||||||||||   ||| |||||   ||||| ||||||||| |||||  ||| ||||||||    ||| |||                                                                               
        TCCGGTTTACGTATAAA ACGGAGACTTGAA   AGT AATCA   AAATT TGAGATTGG AGTTA  TTG ATTGTCTG    TGG TTT                                                                              
AACACAAA                 C             ACC   A     ATC     A         T     -C   A        ----   A   AAGAAAAAACCCGCTCTAAAATCATGAAAAAATATACACAGAAGTAAGTTATGCAGGTGCACGTAATATCCTTCCACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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