SE1730002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2743
  • Ricinus communis
  • SE1730002
  • hAT
  • Hat1
  • 30174:2580564-2581098
  • GTTGTCTG
  • TAGACCTGTTCATGGGCCGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGTCTG                  -   CCTGAC        ACTTTATTTTGAACAAGCTCGAGCCCGCCCAAGTCCGAGAATTTTTTAATATCTCTCAGCCCAAGCCTGAGCCTAAAATTTTTTAAAAGGCCCGGCCCAGCCCAACCAATTGTTAAACCTGTAAATACGGATCGGGTCTGGGCGGGTTCGGGTCGGGCTTGAATTTAGTTTTATTTAAATATATTATTAATAACAATAAAATTATAAACAAAAATAATAGATAGCT
        TAGACCTGTTCATGGGCC GGG      CGGGCTTG                                                                                                                                                                                                                                  
        |||||||||||||||||| |||      ||||||||                                                                                                                                                                                                                                  A
        ATCTGGACAAGTACCCGG CCC      TGGGCGGG                                                                                                                                                                                                                                  
GTCTGTTG                  A   -----A        TTCGGGCGTGAGAAGCCCGGCCCGAACCTGTTGTTAAAAACACATGTTCGGGCCGGGCCGGGCTTGGGTATTTCTCGAGCTTGAAAAGATCAGCCCGAACCCTAAAGGTATTTTTGGGTTCGAGCCGGGCCGGGCTGGGCTACAAATTAAATTAATCCTTTTTTTTACAGTATGGATCGTAAGTTTGGACATTGGAAGTTGAATATTAATTCACGATGTATGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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