SE1720003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2744
  • Ricinus communis
  • SE1720003
  • Mutator
  • M2
  • 30018:295546-296090
  • ATTAGAAAG
  • AGGGTAAAGTTTAAAAAACTATCTTGTGGTTTGGCGCTTTCACACTTGATGGACAGAGGTATTTTCTGTACCAAATGAGTAATATGTGATTTATTCTTTTACATTTTTTAAGTACATTCAATGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTAGAA                                  C     CA       T    A         --     ACC   T     ATA    A   A  C   --         TAA      -TCA        -------CTC   T  TTATTATAAATATTAATTGAAACATAAAATTTTGATAAAATGAGTATTTTTAAGTAATTTAACATCTGACTAAATATTTTGTGATCATAACAAATTGTTAAAACATATTTTTTAATTTTAATCA
       AGGGTAAAGTTTAAAAAACTATCTTGTGGTTTGG GCTTT  CACTTGA GGAC GAGGTATTT  TCTGT   AAA GAGTA   TGTG TTT TT TTT  TACATTTTT   GTACAT    ATGTTTTT          CTT TT                                                                                                                            
       |||||||||||||||||||||||||||||||||| |||||  ||||||| |||| |||||||||  |||||   ||| |||||   |||| ||| || |||  |||||||||   ||||||    ||||||||          ||| ||                                                                                                                            A
       TCCCATTTCAAGTTTTTTGATAGAACACCAAACT CGAAA  GTGAACT CCTG TTCTATAAA  AGATA   TTT CTCAT   GCAC AAA AA AAA  ATGTAAAAA   CATGTA    TACAAAAA          TGT AT                                                                                                                            
AAGATTA                                  A     AA       C    C         AA     --A   C     GGC    A   A  A   TT         -TC      TAAA        TAAAAAAACA   -  CTAAACGTACATAAATTGAACTTGGTAGTGATTTAATATAAAAATATTCGTTATACTATAGATTGTTACGTAGTATCTTAAGTATTTATATATGTTTAAAATAAATTTTTTGATAAAGAATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End