SE1730005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2746
  • Ricinus communis
  • SE1730005
  • hAT
  • Hat1
  • 30162:755350-755911
  • CCCCTTTA
  • TAGACCTGTTCATGGGCCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCCTTTA                  -  --  --    G        GGCCGGGCCTGACCGGGCTTGACTTTATTTTGAACAAGCCCGAGCCCGCTCAAGCTCGGGAATTTTTTAATATCACTCAGCCCAAGCCCGAGCCCGAATTTTTTTTAAAAAGCCCGGCCCGACCAATTGTTAAACCTGTAAATACGGGTCGGGCTGTGCGGGTTCGGGTCGGGCTTGAGTTTAGTTTTATTTAAATATATTATTAATAACAATAAAATTATAAACAAAAATAATAG
        TAGACCTGTTCATGGGCC GG  GC  CTGG CGGGCTCG                                                                                                                                                                                                                                            
        |||||||||||||||||| ||  ||  |||| ||||||||                                                                                                                                                                                                                                             
        ATCTGGACAAGTACCCGG CC  TG  CGGG CCGGGCGG                                                                                                                                                                                                                                            
ATCTCCCC                  A  CA  GG    -        GTCCGGGCGTGAGAAGCCCGGCCCGAACCTGTTGTTAAAAACACATGTTTGGGCCGGGTCGGGCTTGGGTATTTTTCGGACTTAAAAATCCCGGCCCGAACCCTAAAGGTATTTTTAGGTTCAGACCGGGCCGGGCCGGGCTACAAATCAAATTAATCTTTTTTTTTTTACAGTATGGATCGTAAACTTAAACACTGGAAATTGAATATTAATTCACGATGAATGGTGAATCGATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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