SE1720006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2747
  • Ricinus communis
  • SE1720006
  • Mutator
  • M3
  • 29702:92217-92721
  • CGAAAGAGT
  • GTGGGTAAATTGCATAAATGGTACTATAACCATGGCTATTGTATTCATTTGGTACCTCAACTCAATAATCACAAAAATGGTA

Secondary structure and sequence

TSD    TIR
5'



3'
 CGAAAGA T       TT    A        T     C   G TA        A       C          T     -C          CCCCAACTG    -AC        TCTTAAAC    CAGTGATTATATAATGATATGACATCCAAATTCTATCACTAACTACCATATTACCTCTTATTTGGACACAACTAATCCTAGTTAGATGTTAAACATTCTCTCAACTCCTCTATCTTGAACTCATACCTTG
        G GGGTAAA  GCAT AATGGTAC ATAAC ATG C  TTGTATTC TTTGGTA CTCAACTCAA AATCA  AAAAATGGTA         ACTA   ATGAATCG        TTTT                                                                                                                                  
        | |||||||  |||| |||||||| ||||| ||| |  |||||||| ||||||| |||||||||| |||||  ||||||||||         ||||   ||||||||        ||||                                                                                                                                  C
        C CCCATTT  CGTA TTACTATG TATTG TAC G  AATGTAGG GAACCAT GAGTTGAGTT TTAGT  TTTTTACCAT         TGGT   TACTTAGT        TTCC                                                                                                                                  
TGAGAAGG -       TT    A        -     A   A TG        C       A          T     AT          AGAATTCAA    AAT        -----TCA    CATGGAAATATAAAAACCGGTAAAATGCAACTACACCGTCGGTCTAAGAAAGAGATCGAAGGTACAATGGTGACTGGCCATATATTAATTGGGATCATTCGGATTCTTAGGATTAGAGAGTTTATATTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End