SE1730008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2749
  • Ricinus communis
  • SE1730008
  • hAT
  • Hat1
  • 30205:820253-820779
  • CTTGTGGC
  • GTGGCTAGACCTGTTCATGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTT  G  ---                  T  GTACCCGCCCAGGCCCGCACTCTTCGGGCCGGGCTTGGACAACAATTTTTGAGTACAAGCCCGGCCCGGCCTGAACCCATAAAAAGTCCGTAATTCTCGGGTGGGGCTTGGAATTTATATAAAAACCCAAGCCTGGCCCGGCCCAGATCTAGTTTAGTTAGTAAAAAAAAGAAATGTCACACCTAACACTCAACTTATAATTAAGTACCAATACCACTTAGCTACCTATTATTTC
   GT GC   TAGACCTGTTCATGGGCC GG                                                                                                                                                                                                                                           
   || ||   |||||||||||||||||| ||                                                                                                                                                                                                                                            
   CG TG   ATCTGGACAAGTACCCGG CC                                                                                                                                                                                                                                           
     G  TTC                  -  CGGACCCGCCCGAGCCCGGCCCGTACTGGCCCGGACTGAACTAAAACCTATTCGGGCTCGGGCAGGTCCGGGCTCTTAAAAAACTATAGAGATTCGGGTTCGGGCTCGGGCTATAAAAAACTTTTCGGGCCGGGCTGAGCTAGTTAATAATTTATACAGGGTTTAATATCAATGTAAATCTAAATCCCTAAACAAAACTAATTATATAATAATTATTGTTATTTTTGATATTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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