SE1720009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2750
  • Ricinus communis
  • SE1720009
  • Mutator
  • M5
  • 30120:147897-148290
  • TTTTCTTTT
  • GGGTAAATTGTCCATATAGTACTAAATTTTGGGACTATATATCAATTTGATACCAAAATTTTAATTTGAATCAAAATGGTATAAAAAATATAGAAAAATATATCAATTTAGTCTAAATGTCTAATTTCCAACAACGGATGGTGACGTGGCAAGCTGAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCTTTT          T   TA A   C    T    G  CTA                   A              C          A    A         A     CA       C              C A              C               ------   ATATTCCGGTTGTTTCGCCCTC
         GGGTAAATTG CCA  T GTA TAAA TTTG GA   TATATCAATTTGATACCAA ATTTTAATTTGAAT AAAATGGTAT AAAA TATAGAAAA TATAT  ATTTAGT TAAATGTCTAATTT C ACAACGGATGGTGA GTGGCAAGCTGAGGA      GGT                      
         |||||||||| |||  | ||| |||| |||| ||   ||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||| |||||  ||||||| |||||||||||||| | |||||||||||||| |||||||||||||||      |||                       
         CCCATTTAAC GGT  A CAT GTTT GAAC CT   ATATAGTTAAATTATGGTT TAAAATTAAACTTA TTTTACCATA TTTT ATGTCTTTT ATATA  TAAATTA ATTTACAGATTAAA G TGTTGCCTACCACT CACCGTTTGACTCCT      CAA                      
TTTTCCTTT          C   TG C   A    C    A  AAC                   C              T          G    C         C     AG       A              A C              A               CTGTTT   TTAATTGCACCGTGTAATGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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