SE1720011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2752
  • Ricinus communis
  • SE1720011
  • Mutator
  • M5
  • 30190:29940-30331
  • TAATTTGTC
  • GGGTAAATTGCCCAGCTGGTACCAAACTTTGGGACTGTATATCAATTTGATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTGTC         G    GC          C                          AAAA              C      A      A    C                            C               A    A                       ----TATTCC   TGTTTCGCCCCT
         GGGTAAATT CCCA  TGGTACCAAA TTTGGGACTGTATATCAATTTGATAC    ACTTTAATTTGAAT AAAATG TACCAA AGTA AGAAAAGTATATCAATTTAGTCCAAATG TCAATTTTTGACAAC GATG TGACGTGGCAAGCTGAAGAGATA          GGT            
         ||||||||| ||||  |||||||||| ||||||||||||||||||||||||||    |||||||||||||| |||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||          |||             
         CCCATTTAA GGGT  ACCATGGTTT GAATCCTGATATATAGTTAAACTATG    TGGAATTAAACTTA TTTTAC ATGGTT TCAT TCTTTTCATATAGTTGAATCAGGTTTAC GGTTAAAAGCTGTTG CTAC ACTGCACTGTTCGACTTTTCTGT          TGC            
CTGTTTAAT         A    AT          T                          GTGC              A      C      C    A                            A               C    C                       TTCAATTAAC   ACCGTGTGCGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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